The network zoo

netZoo{R,Py,M,C} is a network biology package for the reconstruction and analysis of gene regulatory networks.


R:             netZooR

Python:     netZooPy

MATLAB:   netZooM

C:             netZooC

Starting from netZooM 0.4.1, netZooPy 0.5.1, and netZooR 0.6.1 (which includes pandaR 1.19.4), the default data processing step in PANDA has changed. Data processing was modified in all platforms to give the same output as PANDA in netZooC, which adds rows of zeros if a gene/TF is missing in at least one prior (expression, motif, ppi). The previous behavior can be accessed through the ‘legacy’ option in the variable mode. The option ‘intersection’ of the variable mode removes missing TFs/genes if they are absent from at least one prior.

Live status

Continuous integration is enabled for netZoo using Travis and ZooKeeper.

R           - build status (Ubuntu) - coverage

Python   - build status (Ubuntu, Macos) - coverage

MATLAB - build status (Ubuntu, Macos) - coverage

C           - build status (Ubuntu, Macos) - coverage

netZoo{R,Py,M,C} is a community maintained package licensed under GPL-3.0.