R/visDiffPandaInCytoscape.R
vis.diff.panda.in.cytoscape.Rd
This function is able to modify PANDA network and plot in Cytoscape. Please make sure that Cytoscape is installed and open it before calling this function.
vis.diff.panda.in.cytoscape( merged_panda, condition_name = "cond.1", network_name = "diff.PANDA" )
merged_panda | vector indicating the merged PANDA networks in data frame structure type. |
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condition_name | string vector indicating the same condition name used in |
network_name | Character string indicating the name of Cytoscape network. |
Plot two PANDA networsk in Cytoscape
if (FALSE) { # create a merged PANDA network from two conditions by running \code{\link{panda.diff.edges}} merged.panda <- panda.diff.edges(panda.net1, panda.net2, condition_name="condition1") # then plot two PANDA network in Cytoscape. vis.diff.panda.in.cytoscape(merged.panda,condition_name = "condition1", network_name="diff.PANDA" ) }