This function is able to modify PANDA network and plot in Cytoscape. Please make sure that Cytoscape is installed and open it before calling this function.

vis.diff.panda.in.cytoscape(
  merged_panda,
  condition_name = "cond.1",
  network_name = "diff.PANDA"
)

Arguments

merged_panda

vector indicating the merged PANDA networks in data frame structure type.

condition_name

string vector indicating the same condition name used in panda.diff.edges.

network_name

Character string indicating the name of Cytoscape network.

Value

Plot two PANDA networsk in Cytoscape

Examples

if (FALSE) {
# create a merged PANDA network from two conditions by running \code{\link{panda.diff.edges}}
merged.panda <- panda.diff.edges(panda.net1, panda.net2, condition_name="condition1")
# then plot two PANDA network in Cytoscape.
vis.diff.panda.in.cytoscape(merged.panda,condition_name = "condition1", network_name="diff.PANDA" )
}