Convert .gmt files into a binary matrix.
Usage
sambarConvertgmt(signature, cagenes)
Arguments
- signature
A file containing gene sets (signatures) in .gmt format. These gene sets will be used to de-sparsify the gene-level mutation scores.
- cagenes
A vector of genes, for example of cancer-associated genes. This will be used to subset the gene-level mutation data to.
Value
A matrix containing gene set mutation scores.