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netZooR 1.5.0

Reference
Articles
Detecting differential modules using ALPACA Building PANDA and LIONESS Regulatory Networks from GTEx Gene Expression Data in R netZooR application with TB dataset Using CONDOR for community detection in bipartite graphs Constructing genotype-specific gene regulatory networks with EGRET Comparing LIONESS Regulatory Networks using limma An Introduction to the MONSTER Package SAMBAR: Subtyping Agglomerated Mutations By Annotation Relations Inferring Gene Regulatory Networks from GTEx Gene Expression Data in R with OTTER An Introduction to the pandaR Package Building PANDA Regulatory Networks from GTEx Gene Expression Data in R YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization
Changelog

Example of a gene list

Source: R/SAMBAR.R

genes.Rd

List of cancer-associated genes to subset the mutation data to, as described in Kuijjer et al.

Usage

data(genes)

Format

A character vector of length 2352

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Developed by Marouen Ben Guebila, Tian Wang, John Platig, Marieke Kuijjer, Megha Padi, Rebekka Burkholz, Des Weighill, Kate Shutta.

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