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Check tissues to merge based on gene expression profile

Source: R/YARN.R
checkTissuesToMerge.Rd

Check tissues to merge based on gene expression profile

Usage

checkTissuesToMerge(
  obj,
  majorGroups,
  minorGroups,
  filterFun = NULL,
  plotFlag = TRUE,
  ...
)

Arguments

obj

ExpressionSet object.

majorGroups

Column name in the phenoData slot that describes the general body region or site of the sample.

minorGroups

Column name in the phenoData slot that describes the specific body region or site of the sample.

filterFun

Filter group specific genes that might disrupt PCoA analysis.

plotFlag

TRUE/FALSE whether to plot or not

...

Parameters that can go to checkMisAnnotation

Value

CMDS Plots of the majorGroupss colored by the minorGroupss. Optional matrix of CMDS loadings for each comparison.

See also

checkTissuesToMerge

Examples

data(skin)
checkTissuesToMerge(skin,'SMTS','SMTSD')