Find the robust nodes in ALPACA community using CRANE
Arguments
- input
same input for alpaca: first column TF, second column Genes, third column edge weights from baseline condition, fourth column edge weights from disease condition.
- alp
alpca object in list format (output from alpaca package)
- alpha
alpha paramter perturbs each edge weights
- beta
beta parameter perturbs the strength of each node. Set this to 0 if you want nodes to have node strength identical to the orignal network.
- iteration
Number of CRANE distributions to create. Higher value leads to better ranking but longer runtime.
- isParallel
TRUE = use Multithread / FALSE = do not use Multithread